I'm new in ROMS
I hope every thing is fine with your and somebody please can help me.
I've one problem with my case called "Santander":
This is my .in
" ! C-preprocessing Flag.
MyAppCPP = SANTANDER
! Input variable information file name. This file needs to be processed
! first so all information arrays can be initialized properly.
VARNAME = /home/felipejbarragan11/roms_project/test/varinfo.yaml
! Number of nested grids.
Ngrids = 1
! Number of grid nesting layers. This parameter is used to allow refinement
! and composite grid combinations.
! NestLayers = 1
! Number of grids in each nesting layer [1:NestLayers].
! GridsInLayer = 1
! Grid dimension parameters. See notes below in the Glossary for how to set
! these parameters correctly.
Lm == 1366 ! Number of I-direction INTERIOR RHO-points
Mm == 220 ! Number of J-direction INTERIOR RHO-points
N == 10 ! Number of vertical levels
Nbed = 0 ! Number of sediment bed layers
NAT = 2 ! Number of active tracers (usually, 2)
NPT = 0 ! Number of inactive passive tracers
NCS = 0 ! Number of cohesive (mud) sediment tracers
NNS = 0 ! Number of non-cohesive (sand) sediment tracers
! Domain decomposition parameters for serial, distributed-memory or
! shared-memory configurations used to determine tile horizontal range
! indices (Istr,Iend) and (Jstr,Jend), [1:Ngrids].
NtileI == 1 ! I-direction partition
NtileJ == 1 ! J-direction partition
! Set horizontal and vertical advection schemes for active and inert
! tracers. A different advection scheme is allowed for each tracer.
! For example, a positive-definite (monotonic) algorithm can be activated
! for salinity and inert tracers, while a different one is set for
! temperature. [1:NAT+NPT,Ngrids] values are expected.
!
! Keyword Advection Algorithm
!
! A4 4th-order Akima (horizontal/vertical)
! C2 2nd-order centered differences (horizontal/vertical)
! C4 4th-order centered differences (horizontal/vertical)
! HSIMT 3th-order HSIMT-TVD (horizontal/vertical)
! MPDATA recursive flux corrected MPDATA (horizontal/vertical)
! SPLINES parabolic splines (only vertical)
! SU3 split third-order upstream (horizontal/vertical)
! U3 3rd-order upstream-biased (only horizontal)
!
! The user has the option of specifying the full Keyword or the first
! two letters, regardless if using uppercase or lowercase. If nested
! grids, specify values for each grid (see glossary below).
! Hadvection == U3 \ ! temperature
! U3 ! salinity
! Vadvection == C4 \ ! temperature
! C4 ! salinity
! Adjoint-based algorithms can have different horizontal and schemes
! for active and inert tracers.
!ad_Hadvection == U3 \ ! temperature
! U3 ! salinity
!ad_Vadvection == C4 \ ! temperature
! C4 ! salinity
! Set lateral boundary conditions keyword. Notice that a value is expected
! for each boundary segment per nested grid for each state variable.
!
! Each tracer variable requires [1:4,1:NAT+NPT,Ngrids] values. Otherwise,
! [1:4,1:Ngrids] values are expected for other variables. The boundary
! order is: 1=west, 2=south, 3=east, and 4=north. That is, anticlockwise
! starting at the western boundary.
!
! The keyword is case insensitive and usually has three characters. However,
! it is possible to have compound keywords, if applicable. For example, the
! keyword "RadNud" implies radiation boundary condition with nudging. This
! combination is usually used in active/passive radiation conditions.
!
! Keyword Lateral Boundary Condition Type
!
! Cha Chapman_implicit (free-surface)
! Che Chapman_explicit (free-surface)
! Cla Clamped
! Clo Closed
! Fla Flather (2D momentum) _____N_____ j=Mm
! Gra Gradient | 4 |
! Nes Nested (refinement) | |
! Nud Nudging 1 W E 3
! Per Periodic | |
! Rad Radiation |_____S_____|
! Red Reduced Physics (2D momentum) 2 j=1
! Shc Shchepetkin (2D momentum) i=1 i=Lm
!
! W S E N
! e o a o
! s u s r
! t t t t
! h h
!
! 1 2 3 4
! LBC(isFsur) == Clo Clo Clo Clo ! free-surface
! LBC(isUbar) == Clo Clo Clo Clo ! 2D U-momentum
! LBC(isVbar) == Clo Clo Clo Clo ! 2D V-momentum
! LBC(isUvel) == Clo Clo Clo Clo ! 3D U-momentum
! LBC(isVvel) == Clo Clo Clo Clo ! 3D V-momentum
! LBC(isMtke) == Clo Clo Clo Clo ! mixing TKE
! LBC(isTvar) == Clo Clo Clo Clo \ ! temperature
! Clo Clo Clo Clo ! salinity
! Adjoint-based algorithms can have different lateral boundary
! conditions keywords.
!ad_LBC(isFsur) == Clo Clo Clo Clo ! free-surface
!ad_LBC(isUbar) == Clo Clo Clo Clo ! 2D U-momentum
!ad_LBC(isVbar) == Clo Clo Clo Clo ! 2D U-momentum
!ad_LBC(isUvel) == Clo Clo Clo Clo ! 3D U-momentum
!ad_LBC(isVvel) == Clo Clo Clo Clo ! 3D V-momentum
!ad_LBC(isMtke) == Clo Clo Clo Clo ! mixing TKE
!ad_LBC(isTvar) == Clo Clo Clo Clo \ ! temperature
! Clo Clo Clo Clo ! salinity
! Set lateral open boundary edge volume conservation switch for
! nonlinear model and adjoint-based algorithms. Usually activated
! with radiation boundary conditions to enforce global mass
! conservation, except if tidal forcing is enabled. [1:Ngrids].
! VolCons(west) == F ! western boundary
! VolCons(east) == F ! eastern boundary
! VolCons(south) == F ! southern boundary
! VolCons(north) == F ! northern boundary
!ad_VolCons(west) == F ! western boundary
!ad_VolCons(east) == F ! eastern boundary
!ad_VolCons(south) == F ! southern boundary
!ad_VolCons(north) == F ! northern boundary
! Time-Stepping parameters.
NTIMES == 691200 ! 5 años: 1985-1989
DT == 30 ! segundos
NDTFAST == 30
! Number of timesteps for computing observation impacts during the
! analysis-forecast cycle.
! NTIMES_ANA == 7200 ! analysis interval
! NTIMES_FCT == 7200 ! forecast interval
! Model iteration loops parameters.
ERstr = 1
ERend = 1
Nouter = 1
Ninner = 1
! Nsaddle = 1
Nintervals = 1
! Number of eigenvalues (NEV) and eigenvectors (NCV) to compute for the
! Lanczos/Arnoldi problem in the Generalized Stability Theory (GST)
! analysis. NCV must be greater than NEV (see documentation below).
NEV = 2 ! Number of eigenvalues
NCV = 10 ! Number of eigenvectors
! Input/Output parameters.
NRREC == 0
LcycleRST == T
NRST == 120 ! Cada Hora
NSTA == 120 ! Cada Hora
NFLT == 1
NINFO == 1
! Output history, quicksave, average, and diagnostic files parameters.
LDEFOUT == T
NHIS == 120
NDEFHIS == 86400 ! Cada 30 días
! NQCK == 0
! NDEFQCK == 0
NTSAVG == 1
NAVG == 72
NDEFAVG == 0
NTSDIA == 1
NDIA == 40
NDEFDIA == 86400
! Output tangent linear and adjoint models parameters.
LcycleTLM == F
NTLM == 72
NDEFTLM == 0
LcycleADJ == F
NADJ == 72
NDEFADJ == 0
NSFF == 72
NOBC == 72
! GST output and check pointing restart parameters.
LmultiGST = F ! one eigenvector per file
LrstGST = F ! GST restart switch
MaxIterGST = 500 ! maximum number of iterations
NGST = 10 ! check pointing interval
! Relative accuracy of the Ritz values computed in the GST analysis.
Ritz_tol = 1.0d-15
! Harmonic/biharmonic horizontal diffusion of tracer for nonlinear model
! and adjoint-based algorithms: [1:NAT+NPT,Ngrids].
TNU2 == 10.0d0 0.0d0 ! m2/s
TNU4 == 2.0d0 ! m4/s
ad_TNU2 == 0.0d0 0.0d0 ! m2/s
ad_TNU4 == 0.0d0 0.0d0 ! m4/s
! Harmonic/biharmonic, horizontal viscosity coefficient for nonlinear model
! and adjoint-based algorithms: [Ngrids].
VISC2 == 15.0d0 ! m2/s
VISC4 == 0.0d0 ! m4/s
ad_VISC2 == 0.0d0 ! m2/s
ad_VISC4 == 0.0d0 ! m4/s
! Logical switches (TRUE/FALSE) to increase/decrease horizontal viscosity
! and/or diffusivity in specific areas of the application domain (like
! sponge areas) for the desired application grid.
! LuvSponge == F ! horizontal momentum
!LtracerSponge == F F ! temperature, salinity, inert
! Vertical mixing coefficients for tracers in nonlinear model and
! basic state scale factor in adjoint-based algorithms: [1:NAT+NPT,Ngrids]
AKT_BAK == 1.0d-6 1.0d-6 ! m2/s
ad_AKT_fac == 1.0d0 1.0d0 ! nondimensional
! Vertical mixing coefficient for momentum for nonlinear model and
! basic state scale factor in adjoint-based algorithms: [Ngrids].
AKV_BAK == 2.0d-2 ! m2/s
ad_AKV_fac == 1.0d0 ! nondimensional
! Upper threshold values to limit vertical mixing coefficients computed
! from vertical mixing parameterizations. Although this is an engineering
! fix, the vertical mixing values inferred from ocean observations are
! rarely higher than this upper limit value.
! AKT_LIMIT == 1.0d-3 1.0d-3 ! m2/s
! AKV_LIMIT == 1.0d-3 ! m2/s
! Turbulent closure parameters.
AKK_BAK == 5.0d-6 ! m2/s
AKP_BAK == 5.0d-6 ! m2/s
TKENU2 == 0.0d0 ! m2/s
TKENU4 == 0.0d0 ! m4/s
! Generic length-scale turbulence closure parameters.
GLS_P == 3.0d0 ! K-epsilon
GLS_M == 1.5d0
GLS_N == -1.0d0
GLS_Kmin == 7.6d-6
GLS_Pmin == 1.0d-12
GLS_CMU0 == 0.5477d0
GLS_C1 == 1.44d0
GLS_C2 == 1.92d0
GLS_C3M == -0.4d0
GLS_C3P == 1.0d0
GLS_SIGK == 1.0d0
GLS_SIGP == 1.30d0
! Constants used in surface turbulent kinetic energy flux computation.
CHARNOK_ALPHA == 1400.0d0 ! Charnok surface roughness
ZOS_HSIG_ALPHA == 0.5d0 ! roughness from wave amplitude
SZ_ALPHA == 0.25d0 ! roughness from wave dissipation
CRGBAN_CW == 100.0d0 ! Craig and Banner wave breaking
! Constants used in momentum stress computation.
RDRG == 3.0d-04 ! m/s
RDRG2 == 1.5d-03 ! nondimensional
Zob == 0.02d0 ! m
Zos == 0.02d0 ! m
! Height (m) of atmospheric measurements for Bulk fluxes parameterization.
BLK_ZQ == 10.0d0 ! air humidity
BLK_ZT == 10.0d0 ! air temperature
BLK_ZW == 10.0d0 ! winds
! Minimum depth for wetting and drying.
DCRIT == 0.10d0 ! m
! Various parameters.
WTYPE == 1
LEVSFRC == 15
LEVBFRC == 1
! Set vertical, terrain-following coordinates transformation equation and
! stretching function (see below for details), [1:Ngrids].
Vtransform == 2 ! transformation equation
Vstretching == 4 ! stretching function
! Vertical S-coordinates parameters (see below for details), [1:Ngrids].
THETA_S == 0.0d0 ! surface stretching parameter
THETA_B == 0.0d0 ! bottom stretching parameter
TCLINE == 5.0d0 ! critical depth (m)
! Mean Density and Brunt-Vaisala frequency.
RHO0 = 1025.0d0 ! kg/m3
BVF_BAK = 1.0d-5 ! 1/s2
! If tide generating forces, set switch (T/F) to apply a 18.6-year lunar
! nodal correction to equilibrium tide constituents.
! Lnodal = T
! Time-stamp assigned for model initialization, reference time
! origin for tidal forcing, and model reference time for output
! NetCDF units attribute.
DSTART = 730319.0d0 ! 1 ene 1985
TIDE_START = 0.0d0 ! days
TIME_REF = -00010101.0d0 ! yyyymmdd.dd
! Nudging/relaxation time scales, inverse scales will be computed
! internally, [1:Ngrids].
TNUDG == 2*0.0d0 ! days
ZNUDG == 0.0d0 ! days
M2NUDG == 0.0d0 ! days
M3NUDG == 0.0d0 ! days
! Factor between passive (outflow) and active (inflow) open boundary
! conditions, [1:Ngrids]. If OBCFAC > 1, nudging on inflow is stronger
! than on outflow (recommended).
OBCFAC == 0.0d0 ! nondimensional
! Linear equation of State parameters:
R0 == 1027.0d0 ! kg/m3
T0 == 14.0d0 ! Celsius
S0 == 35.0d0 ! nondimensional
TCOEF == 1.7d-4 ! 1/Celsius
SCOEF == 0.0d0 ! nondimensional
! Slipperiness parameter: 1.0 (free slip) or -1.0 (no slip)
GAMMA2 == 1.0d0
! Logical switches (TRUE/FALSE) to activate horizontal momentum transport
! point Sources/Sinks (like river runoff transport) and mass point
! Sources/Sinks (like volume vertical influx), [1:Ngrids].
! LuvSrc == F ! horizontal momentum transport
! LwSrc == F ! volume vertical influx
! Logical switches (TRUE/FALSE) to activate tracers point Sources/Sinks
! (like river runoff) and to specify which tracer variables to consider:
! [1:NAT+NPT,Ngrids]. See glossary below for details.
LtracerSrc == T T ! temperature, salinity, inert
! Logical switches (TRUE/FALSE) to read and process climatology fields.
! See glossary below for details.
! LsshCLM == F ! sea-surface height
! Lm2CLM == F ! 2D momentum
! Lm3CLM == F ! 3D momentum
LtracerCLM == F F ! temperature, salinity, inert
! Logical switches (TRUE/FALSE) to nudge the desired climatology field(s).
! If not analytical climatology fields, users need to turn ON the logical
! switches above to process the fields from the climatology NetCDF file
! that are needed for nudging. See glossary below for details.
! LnudgeM2CLM == F ! 2D momentum
! LnudgeM3CLM == F ! 3D momentum
! LnudgeTCLM == F F ! temperature, salinity, inert
! Starting (DstrS) and ending (DendS) day for adjoint sensitivity forcing.
! DstrS must be less or equal to DendS. If both values are zero, their
! values are reset internally to the full range of the adjoint integration.
DstrS == 0.0d0 ! starting day
DendS == 0.0d0 ! ending day
! Starting and ending vertical levels of the 3D adjoint state variables
! whose sensitivity is required.
KstrS == 1 ! starting level
KendS == 1 ! ending level
! Logical switches (TRUE/FALSE) to specify the adjoint state variables
! whose sensitivity is required.
Lstate(isFsur) == F ! free-surface
Lstate(isUbar) == F ! 2D U-momentum
Lstate(isVbar) == F ! 2D V-momentum
Lstate(isUvel) == F ! 3D U-momentum
Lstate(isVvel) == F ! 3D V-momentum
Lstate(isWvel) == F ! 3D W-momentum
Lstate(isTvar) == F F ! NT tracers
! Logical switches (TRUE/FALSE) to specify the state variables for
! which Forcing Singular Vectors or Stochastic Optimals is required.
Fstate(isFsur) == F ! free-surface
Fstate(isUbar) == F ! 2D U-momentum
Fstate(isVbar) == F ! 2D V-momentum
Fstate(isUvel) == F ! 3D U-momentum
Fstate(isVvel) == F ! 3D V-momentum
Fstate(isTvar) == F F ! NT tracers
Fstate(isUstr) == T ! surface U-stress
Fstate(isVstr) == T ! surface V-stress
Fstate(isTsur) == F F ! NT surface tracers flux
! Stochastic Optimals time decorrelation scale (days) assumed for
! red noise processes.
SO_decay == 2.0d0 ! days
! Stochastic Optimals surface forcing standard deviation for
! dimensionalization.
SO_sdev(isFsur) == 1.0d0 ! free-surface
SO_sdev(isUbar) == 1.0d0 ! 2D U-momentum
SO_sdev(isVbar) == 1.0d0 ! 2D V-momentum
SO_sdev(isUvel) == 1.0d0 ! 3D U-momentum
SO_sdev(isVvel) == 1.0d0 ! 3D V-momentum
SO_sdev(isTvar) == 1.0d0 1.0d0 ! NT tracers
SO_sdev(isUstr) == 1.0d0 ! surface U-stress
SO_sdev(isVstr) == 1.0d0 ! surface V-stress
SO_sdev(isTsur) == 1.0d0 1.0d0 ! NT surface tracers flux
! Logical switches (TRUE/FALSE) to activate writing of fields into
! HISTORY output file.
Hout(idUvel) == T ! u 3D U-velocity
Hout(idVvel) == T ! v 3D V-velocity
Hout(idu3dE) == F ! u_eastward 3D U-eastward at RHO-points
Hout(idv3dN) == F ! v_northward 3D V-northward at RHO-points
Hout(idWvel) == T ! w 3D W-velocity
Hout(idOvel) == F ! omega omega vertical velocity
Hout(idUbar) == T ! ubar 2D U-velocity
Hout(idVbar) == T ! vbar 2D V-velocity
Hout(idu2dE) == F ! ubar_eastward 2D U-eastward at RHO-points
Hout(idv2dN) == F ! vbar_northward 2D V-northward at RHO-points
Hout(idFsur) == T ! zeta free-surface
Hout(idBath) == F ! bath time-dependent bathymetry
Hout(idTvar) == T F ! temp, salt temperature and salinity
Hout(idpthR) == F ! z_rho time-varying depths of RHO-points
Hout(idpthU) == F ! z_u time-varying depths of U-points
Hout(idpthV) == F ! z_v time-varying depths of V-points
Hout(idpthW) == F ! z_w time-varying depths of W-points
Hout(idUsms) == F ! sustr surface U-stress
Hout(idVsms) == F ! svstr surface V-stress
Hout(idUbms) == F ! bustr bottom U-stress
Hout(idVbms) == F ! bvstr bottom V-stress
Hout(idUbrs) == F ! bustrc bottom U-current stress
Hout(idVbrs) == F ! bvstrc bottom V-current stress
Hout(idUbws) == F ! bustrw bottom U-wave stress
Hout(idVbws) == F ! bvstrw bottom V-wave stress
Hout(idUbcs) == F ! bustrcwmax bottom max wave-current U-stress
Hout(idVbcs) == F ! bvstrcwmax bottom max wave-current V-stress
Hout(idUbot) == F ! Ubot bed wave orbital U-velocity
Hout(idVbot) == F ! Vbot bed wave orbital V-velocity
Hout(idUbur) == F ! Ur bottom U-velocity above bed
Hout(idVbvr) == F ! Vr bottom V-velocity above bed
Hout(idW2xx) == F ! Sxx_bar 2D radiation stress, Sxx component
Hout(idW2xy) == F ! Sxy_bar 2D radiation stress, Sxy component
Hout(idW2yy) == F ! Syy_bar 2D radiation stress, Syy component
Hout(idU2rs) == F ! Ubar_Rstress 2D radiation U-stress
Hout(idV2rs) == F ! Vbar_Rstress 2D radiation V-stress
Hout(idU2Sd) == F ! ubar_stokes 2D U-Stokes velocity
Hout(idV2Sd) == F ! vbar_stokes 2D V-Stokes velocity
Hout(idW3xx) == F ! Sxx 3D radiation stress, Sxx component
Hout(idW3xy) == F ! Sxy 3D radiation stress, Sxy component
Hout(idW3yy) == F ! Syy 3D radiation stress, Syy component
Hout(idW3zx) == F ! Szx 3D radiation stress, Szx component
Hout(idW3zy) == F ! Szy 3D radiation stress, Szy component
Hout(idU3rs) == F ! u_Rstress 3D U-radiation stress
Hout(idV3rs) == F ! v_Rstress 3D V-radiation stress
Hout(idU3Sd) == F ! u_stokes 3D U-Stokes velocity
Hout(idV3Sd) == F ! v_stokes 3D V-Stokes velocity
Hout(idWamp) == F ! Hwave wave height
Hout(idWlen) == F ! Lwave wave length
Hout(idWdir) == F ! Dwave wave direction
Hout(idWptp) == F ! Pwave_top wave surface period
Hout(idWpbt) == F ! Pwave_bot wave bottom period
Hout(idWorb) == F ! Ub_swan wave bottom orbital velocity
Hout(idWdis) == F ! Wave_dissip wave dissipation
Hout(idPair) == F ! Pair surface air pressure
Hout(idTair) == F ! Tair surface air temperature
Hout(idUair) == F ! Uair surface U-wind component
Hout(idVair) == F ! Vair surface V-wind component
Hout(idTsur) == F F ! shflux, ssflux surface net heat and salt flux
Hout(idLhea) == F ! latent latent heat flux
Hout(idShea) == F ! sensible sensible heat flux
Hout(idLrad) == F ! lwrad longwave radiation flux
Hout(idSrad) == F ! swrad shortwave radiation flux
Hout(idEmPf) == F ! EminusP E-P flux
Hout(idevap) == F ! evaporation evaporation rate
Hout(idrain) == F ! rain precipitation rate
Hout(idDano) == F ! rho density anomaly
Hout(idVvis) == F ! AKv vertical viscosity
Hout(idTdif) == F ! AKt vertical T-diffusion
Hout(idSdif) == F ! AKs vertical Salinity diffusion
Hout(idHsbl) == F ! Hsbl depth of surface boundary layer
Hout(idHbbl) == F ! Hbbl depth of bottom boundary layer
Hout(idMtke) == F ! tke turbulent kinetic energy
Hout(idMtls) == F ! gls turbulent length scale
! Logical switches (TRUE/FALSE) to activate writing of extra inert passive
! tracers other than biological and sediment tracers into the HISTORY
! output file. An inert passive tracer is one that it is only advected and
! diffused. Other processes are ignored. These tracers include, for example,
! dyes, pollutants, oil spills, etc. NPT values are expected. However, these
! switches can be activated using compact parameter specification.
Hout(inert) == T ! dye_01, ... inert passive tracers
!Hout(idBott) == F F F F F F F F F F F F F F F F
! Logical switches (TRUE/FALSE) to activate writing of fields into
! QUICKSAVE output file.
!Qout(idUvel) == F ! u 3D U-velocity
!Qout(idVvel) == F ! v 3D V-velocity
!Qout(idu3dE) == F ! u_eastward 3D U-eastward at RHO-points
!Qout(idv3dN) == F ! v_northward 3D V-northward at RHO-points
!Qout(idWvel) == F ! w 3D W-velocity
!Qout(idOvel) == F ! omega omega vertical velocity
!Qout(idUbar) == T ! ubar 2D U-velocity
!Qout(idVbar) == T ! vbar 2D V-velocity
!Qout(idu2dE) == T ! ubar_eastward 2D U-eastward at RHO-points
!Qout(idv2dN) == T ! vbar_northward 2D V-northward at RHO-points
!Qout(idFsur) == T ! zeta free-surface
!Qout(idBath) == T ! bath time-dependent bathymetry
!Qout(idTvar) == F F ! temp, salt temperature and salinity
!Qout(idUsur) == T ! u_sur surface U-velocity
!Qout(idVsur) == T ! v_sur surface V-velocity
!Qout(idUsuE) == T ! u_sur_eastward surface U-eastward velocity
!Qout(idVsuN) == T ! v_sur_northward surface V-northward velocity
!Qout(idsurT) == T T ! temp_sur, salt_sur surface temperature and salinity
!Qout(idpthR) == F ! z_rho time-varying depths of RHO-points
!Qout(idpthU) == F ! z_u time-varying depths of U-points
!Qout(idpthV) == F ! z_v time-varying depths of V-points
!Qout(idpthW) == F ! z_w time-varying depths of W-points
!Qout(idUsms) == F ! sustr surface U-stress
!Qout(idVsms) == F ! svstr surface V-stress
!Qout(idUbms) == F ! bustr bottom U-stress
!Qout(idVbms) == F ! bvstr bottom V-stress
!Qout(idUbrs) == F ! bustrc bottom U-current stress
!Qout(idVbrs) == F ! bvstrc bottom V-current stress
!Qout(idUbws) == F ! bustrw bottom U-wave stress
!Qout(idVbws) == F ! bvstrw bottom V-wave stress
!Qout(idUbcs) == F ! bustrcwmax bottom max wave-current U-stress
!Qout(idVbcs) == F ! bvstrcwmax bottom max wave-current V-stress
!Qout(idUbot) == F ! Ubot bed wave orbital U-velocity
!Qout(idVbot) == F ! Vbot bed wave orbital V-velocity
!Qout(idUbur) == F ! Ur bottom U-velocity above bed
!Qout(idVbvr) == F ! Vr bottom V-velocity above bed
!Qout(idW2xx) == F ! Sxx_bar 2D radiation stress, Sxx component
!Qout(idW2xy) == F ! Sxy_bar 2D radiation stress, Sxy component
!Qout(idW2yy) == F ! Syy_bar 2D radiation stress, Syy component
!Qout(idU2rs) == F ! Ubar_Rstress 2D radiation U-stress
!Qout(idV2rs) == F ! Vbar_Rstress 2D radiation V-stress
!Qout(idU2Sd) == F ! ubar_stokes 2D U-Stokes velocity
!Qout(idV2Sd) == F ! vbar_stokes 2D V-Stokes velocity
!Qout(idW3xx) == F ! Sxx 3D radiation stress, Sxx component
!Qout(idW3xy) == F ! Sxy 3D radiation stress, Sxy component
!Qout(idW3yy) == F ! Syy 3D radiation stress, Syy component
!Qout(idW3zx) == F ! Szx 3D radiation stress, Szx component
!Qout(idW3zy) == F ! Szy 3D radiation stress, Szy component
!Qout(idU3rs) == F ! u_Rstress 3D U-radiation stress
!Qout(idV3rs) == F ! v_Rstress 3D V-radiation stress
!Qout(idU3Sd) == F ! u_stokes 3D U-Stokes velocity
!Qout(idV3Sd) == F ! v_stokes 3D V-Stokes velocity
!Qout(idWamp) == F ! Hwave wave height
!Qout(idWlen) == F ! Lwave wave length
!Qout(idWdir) == F ! Dwave wave direction
!Qout(idWptp) == F ! Pwave_top wave surface period
!Qout(idWpbt) == F ! Pwave_bot wave bottom period
!Qout(idWorb) == F ! Ub_swan wave bottom orbital velocity
!Qout(idWdis) == F ! Wave_dissip wave dissipation
!Qout(idPair) == F ! Pair surface air pressure
!Qout(idTair) == F ! Tair surface air temperature
!Qout(idUair) == F ! Uair surface U-wind component
!Qout(idVair) == F ! Vair surface V-wind component
!Qout(idTsur) == F F ! shflux, ssflux surface net heat and salt flux
!Qout(idLhea) == F ! latent latent heat flux
!Qout(idShea) == F ! sensible sensible heat flux
!Qout(idLrad) == F ! lwrad longwave radiation flux
!Qout(idSrad) == F ! swrad shortwave radiation flux
!Qout(idEmPf) == F ! EminusP E-P flux
!Qout(idevap) == F ! evaporation evaporation rate
!Qout(idrain) == F ! rain precipitation rate
!Qout(idDano) == F ! rho density anomaly
!Qout(idVvis) == F ! AKv vertical viscosity
!Qout(idTdif) == F ! AKt vertical T-diffusion
!Qout(idSdif) == F ! AKs vertical Salinity diffusion
!Qout(idHsbl) == F ! Hsbl depth of surface boundary layer
!Qout(idHbbl) == F ! Hbbl depth of bottom boundary layer
!Qout(idMtke) == F ! tke turbulent kinetic energy
!Qout(idMtls) == F ! gls turbulent length scale
! Logical switches (TRUE/FALSE) to activate writing of extra inert passive
! tracers other than biological and sediment tracers into the QUICKSAVE
! output file. An inert passive tracer is one that it is only advected and
! diffused. Other processes are ignored. These tracers include, for example,
! dyes, pollutants, oil spills, etc. NPT values are expected. However, these
! switches can be activated using compact parameter specification.
! Qout(inert) == F ! dye_01, ... inert passive tracers
! Qout(Snert) == F ! dye_01_sur, ... surface inert passive tracers
! Logical switches (TRUE/FALSE) to activate writing of time-averaged
! fields into AVERAGE output file.
Aout(idUvel) == F ! u 3D U-velocity
Aout(idVvel) == F ! v 3D V-velocity
Aout(idu3dE) == F ! u_eastward 3D U-eastward at RHO-points
Aout(idv3dN) == F ! v_northward 3D V-northward at RHO-points
Aout(idWvel) == F ! w 3D W-velocity
Aout(idOvel) == F ! omega omega vertical velocity
Aout(idUbar) == T ! ubar 2D U-velocity
Aout(idVbar) == T ! vbar 2D V-velocity
Aout(idu2dE) == F ! ubar_eastward 2D U-eastward at RHO-points
Aout(idv2dN) == F ! vbar_northward 2D V-northward at RHO-points
Aout(idFsur) == T ! zeta free-surface
Aout(idTvar) == F F ! temp, salt temperature and salinity
Aout(idUsms) == F ! sustr surface U-stress
Aout(idVsms) == F ! svstr surface V-stress
Aout(idUbms) == F ! bustr bottom U-stress
Aout(idVbms) == F ! bvstr bottom V-stress
Aout(idW2xx) == F ! Sxx_bar 2D radiation stress, Sxx component
Aout(idW2xy) == F ! Sxy_bar 2D radiation stress, Sxy component
Aout(idW2yy) == F ! Syy_bar 2D radiation stress, Syy component
Aout(idU2rs) == F ! Ubar_Rstress 2D radiation U-stress
Aout(idV2rs) == F ! Vbar_Rstress 2D radiation V-stress
Aout(idU2Sd) == F ! ubar_stokes 2D U-Stokes velocity
Aout(idV2Sd) == F ! vbar_stokes 2D V-Stokes velocity
Aout(idW3xx) == F ! Sxx 3D radiation stress, Sxx component
Aout(idW3xy) == F ! Sxy 3D radiation stress, Sxy component
Aout(idW3yy) == F ! Syy 3D radiation stress, Syy component
Aout(idW3zx) == F ! Szx 3D radiation stress, Szx component
Aout(idW3zy) == F ! Szy 3D radiation stress, Szy component
Aout(idU3rs) == F ! u_Rstress 3D U-radiation stress
Aout(idV3rs) == F ! v_Rstress 3D V-radiation stress
Aout(idU3Sd) == F ! u_stokes 3D U-Stokes velocity
Aout(idV3Sd) == F ! v_stokes 3D V-Stokes velocity
Aout(idPair) == F ! Pair surface air pressure
Aout(idTair) == F ! Tair surface air temperature
Aout(idUair) == F ! Uair surface U-wind component
Aout(idVair) == F ! Vair surface V-wind component
Aout(idTsur) == F F ! shflux, ssflux surface net heat and salt flux
Aout(idLhea) == F ! latent latent heat flux
Aout(idShea) == F ! sensible sensible heat flux
Aout(idLrad) == F ! lwrad longwave radiation flux
Aout(idSrad) == F ! swrad shortwave radiation flux
Aout(idevap) == F ! evaporation evaporation rate
Aout(idrain) == F ! rain precipitation rate
Aout(idDano) == F ! rho density anomaly
Aout(idVvis) == F ! AKv vertical viscosity
Aout(idTdif) == F ! AKt vertical T-diffusion
Aout(idSdif) == F ! AKs vertical Salinity diffusion
Aout(idHsbl) == F ! Hsbl depth of surface boundary layer
Aout(idHbbl) == F ! Hbbl depth of bottom boundary layer
Aout(id2dRV) == F ! pvorticity_bar 2D relative vorticity
Aout(id3dRV) == F ! pvorticity 3D relative vorticity
Aout(id2dPV) == F ! rvorticity_bar 2D potential vorticity
Aout(id3dPV) == F ! rvorticity 3D potential vorticity
Aout(idu3dD) == F ! u_detided detided 3D U-velocity
Aout(idv3dD) == F ! v_detided detided 3D V-velocity
Aout(idu2dD) == F ! ubar_detided detided 2D U-velocity
Aout(idv2dD) == F ! vbar_detided detided 2D V-velocity
Aout(idFsuD) == F ! zeta_detided detided free-surface
Aout(idTrcD) == F F ! temp_detided, ... detided temperature and salinity
Aout(idHUav) == F ! Huon u-volume flux, Huon
Aout(idHVav) == F ! Hvom v-volume flux, Hvom
Aout(idUUav) == F ! uu quadratic <u*u> term
Aout(idUVav) == F ! uv quadratic <u*v> term
Aout(idVVav) == F ! vv quadratic <v*v> term
Aout(idU2av) == F ! ubar2 quadratic <ubar*ubar> term
Aout(idV2av) == F ! vbar2 quadratic <vbar*vbar> term
Aout(idZZav) == F ! zeta2 quadratic <zeta*zeta> term
Aout(idTTav) == F F ! temp_2, ... quadratic <t*t> tracer terms
Aout(idUTav) == F F ! u_temp, ... quadratic <u*t> tracer terms
Aout(idVTav) == F F ! v_temp, ... quadratic <v*t> tracer terms
Aout(iHUTav) == F F ! Huon_temp, ... tracer volume flux, <Huon*t>
Aout(iHVTav) == F F ! Hvom_temp, ... tracer volume flux, <Hvom*t>
! Logical switches (TRUE/FALSE) to activate writing of extra inert passive
! tracers other than biological and sediment tracers into the AVERAGE file.
Aout(inert) == T ! dye_01, ... inert passive tracers
! Logical switches (TRUE/FALSE) to activate writing of time-averaged,
! 2D momentum (ubar,vbar) diagnostic terms into DIAGNOSTIC output file.
Dout(M2rate) == T ! ubar_accel, ... acceleration
Dout(M2pgrd) == T ! ubar_prsgrd, ... pressure gradient
Dout(M2fcor) == T ! ubar_cor, ... Coriolis force
Dout(M2hadv) == T ! ubar_hadv, ... horizontal total advection
Dout(M2xadv) == T ! ubar_xadv, ... horizontal XI-advection
Dout(M2yadv) == T ! ubar_yadv, ... horizontal ETA-advection
Dout(M2hrad) == T ! ubar_hrad, ... horizontal total radiation stress
Dout(M2hvis) == T ! ubar_hvisc, ... horizontal total viscosity
Dout(M2xvis) == T ! ubar_xvisc, ... horizontal XI-viscosity
Dout(M2yvis) == T ! ubar_yvisc, ... horizontal ETA-viscosity
Dout(M2sstr) == T ! ubar_sstr, ... surface stress
Dout(M2bstr) == T ! ubar_bstr, ... bottom stress
! Logical switches (TRUE/FALSE) to activate writing of time-averaged,
! 3D momentum (u,v) diagnostic terms into DIAGNOSTIC output file.
Dout(M3rate) == T ! u_accel, ... acceleration
Dout(M3pgrd) == T ! u_prsgrd, ... pressure gradient
Dout(M3fcor) == T ! u_cor, ... Coriolis force
Dout(M3hadv) == T ! u_hadv, ... horizontal total advection
Dout(M3xadv) == T ! u_xadv, ... horizontal XI-advection
Dout(M3yadv) == T ! u_yadv, ... horizontal ETA-advection
Dout(M3vadv) == T ! u_vadv, ... vertical advection
Dout(M3hrad) == T ! u_hrad, ... horizontal total radiation stress
Dout(M3vrad) == T ! u_vrad, ... vertical radiation stress
Dout(M3hvis) == T ! u_hvisc, ... horizontal total viscosity
Dout(M3xvis) == T ! u_xvisc, ... horizontal XI-viscosity
Dout(M3yvis) == T ! u_yvisc, ... horizontal ETA-viscosity
Dout(M3vvis) == T ! u_vvisc, ... vertical viscosity
! Logical switches (TRUE/FALSE) to activate writing of time-averaged,
! active (temperature and salinity) and passive (inert) tracer diagnostic
! terms into DIAGNOSTIC output file: [1:NAT+NPT,Ngrids].
Dout(iTrate) == T T ! temp_rate, ... time rate of change
Dout(iThadv) == T T ! temp_hadv, ... horizontal total advection
Dout(iTxadv) == T T ! temp_xadv, ... horizontal XI-advection
Dout(iTyadv) == T T ! temp_yadv, ... horizontal ETA-advection
Dout(iTvadv) == T T ! temp_vadv, ... vertical advection
Dout(iThdif) == T T ! temp_hdiff, ... horizontal total diffusion
Dout(iTxdif) == T T ! temp_xdiff, ... horizontal XI-diffusion
Dout(iTydif) == T T ! temp_ydiff, ... horizontal ETA-diffusion
Dout(iTsdif) == T T ! temp_sdiff, ... horizontal S-diffusion
Dout(iTvdif) == T T ! temp_vdiff, ... vertical diffusion
! Generic User parameters, [1:NUSER].
NUSER = 0
USER = 0.d0
! Input and Output files processing library to use:
!
! [1] Standard NetCDF-3 or NetCDF-4 library
! [2] Serial or Parallel I/O with Parallel-IO (PIO) library (MPI only)
! INP_LIB = 1
! OUT_LIB = 1
! PIO library methods for reading/writing NetCDF files:
!
! [0] parallel read and write of PnetCDF (CDF-5, not recommended)
! [1] parallel read and write of NetCDF3 (64-bit offset)
! [2] serial read and write of NetCDF3 (64-bit offset)
! [3] parallel read and serial write of NetCDF4/HDF5
! [4] parallel read and write of NETCDF4/HDF5
! PIO_METHOD = 2
! PIO library MPI processes set-up:
! PIO_IOTASKS = 1 ! number of I/O tasks to define
! PIO_STRIDE = 1 ! stride in the MPI-ran between I/O tasks
! PIO_BASE = 0 ! offset for the first I/O task
! PIO_AGGREG = 1 ! number of MPI-aggregators to use
! PIO library rearranger methods for moving data between computational and I/O
! processes:
!
! [1] Box rearrangement
! [2] Subset rearrangement
! PIO_REARR = 1
! PIO library rearranger flag for MPI communications between computational
! and I/O processes:
!
! [0] Point-to-Point (low-level communications)
! [1] Collective (high-level grouped communications)
!PIO_REARRCOM = 0
! PIO library rearranger flow control direction flag for MPI communications
! between computational and I/O processes:
!
! [0] Enable computational to I/O processes, and vice versa
! [2] Enable computational to I/O processes only
! [3] Enable I/O to computational processes only
! [4] Disable flow control
!PIO_REARRDIR = 0
! PIO rearranger options for computational to I/O processes (C2I):
! PIO_C2I_HS = T ! Enable C2I handshake (T/F)
!PIO_C2I_Send = T ! Enable C2I Isends (T/F)
!PIO_C2I_Preq = 64 ! Maximum pending C2I requests
! PIO rearranger options for I/O to computational processes (I2C):
! PIO_I2C_HS = T ! Enable I2C handshake (T/F)
!PIO_I2C_Send = T ! Enable I2C Isends (T/F)
!PIO_I2C_Preq = 65 ! Maximum pending I2C requests
! If OUT_LIB=1, NetCDF-4/HDF5 compression parameters for output files.
NC_SHUFFLE = 1 ! if non-zero, turn on shuffle filter
NC_DEFLATE = 1 ! if non-zero, turn on deflate filter
NC_DLEVEL = 1 ! deflate level [0-9]
! Input NetCDF file names, [1:Ngrids].
GRDNAME == ./Inputs/seagrid_Malla_Detalle_mejorada_325m_smooth10.nc
ININAME == ./Inputs/p2_frc_y_bry_rst.nc
ITLNAME == roms_itl.nc
IRPNAME == roms_irp.nc
IADNAME == roms_iad.nc
FWDNAME == roms_fwd.nc
ADSNAME == roms_ads.nc
! Input adjoint forcing NetCDF filenames for computing observations
! impacts during the analysis-forecast cycle. If the forecast error
! metric is defined in state-space, then FOInameA and FOInameB should
! be regular adjoint forcing files just like ADSname. If the forecast
! error metric is defined in observation space (OBS_SPACE is activated)
! then the forecast is initialized OIFnameA and OIFnameB (specified in
! s4dvar.in input script) will have the structure of a 4D-Var observation
! file.
! FOInameA == roms_foi_a.nc
! FOInameB == roms_foi_b.nc
! Input NetCDF filenames for the forecasts initialized from the analysis
! of the current 4D-Var cycle (FCTnameA) and initialized from the analysis
! of the previous 4D-Var cycle (FCTnameB).
! FCTnameA == roms_fct_a.nc
! FCTnameB == roms_fct_b.nc
! Nesting grids connectivity data: contact points information. This
! NetCDF file is special and complex. It is currently generated using
! the script "matlab/grid/contact.m" from the Matlab repository.
! NGCNAME = roms_ngc.nc
! Input lateral boundary conditions file names. The USER has the option
! to separate the required lateral boundary variables into individual
! NetCDF files (NBCFILES > 1), as in the input surface forcing. Also,
! the USER may split input data time records into several NetCDF files
! (monthly, seasonal, or annual). See prologue instructions above. Use
! a single line per entry with a continuation (\) or a vertical bar (|)
! symbol after each entry, except the last one.
NBCFILES == 1 ! number of boundary files
BRYNAME == ./Inputs/001_bry.nc
! Input climatology file names. The USER has the option to separate the
! climatology variables into individual NetCDF files (NCLMFILES > 1),
! as in the input surface forcing. Also, the USER may split input data
! time records into several NetCDF files (monthly, seasonal, or annual).
! See prologue instructions above. Use a single line per entry with a
! continuation (\) or a vertical bar (|) symbol after each entry, except
! the last one.
NCLMFILES == 1 ! number of climatology files
CLMNAME == roms_clm.nc
! Input climatology nudging coefficients file name.
! NUDNAME == roms_nud.nc
! Input Sources/Sinks forcing (like river runoff) file name.
! SSFNAME == roms_rivers.nc
! Input tidal forcing file name.
! TIDENAME == roms_tides.nc
! Input forcing NetCDF file name(s).
!
! The USER has the option to enter several sets of file names for each
! nested grid. For example, the USER may have different data for the
! wind products, heat fluxes, etc. Alternatively, if the all the forcing
! files are the same for nesting and the data is in its native resolution,
! we could enter only one set of files names and ROMS will replicate those
! files internally to the remaining grids using the plural KEYWORD protocol.
!
! The model will scan the files and will read the needed data from the first
! file in the list containing the forcing field. Therefore, the order of the
! filenames is critical. If using multiple forcing files per grid, first
! enter all the file names for grid one followed by two, and so on. It is
! also possible to split input data time records into several NetCDF files
! (see Prolog instructions above). Use a single line per entry with a
! continuation (\) or a vertical bar (|) symbol after each entry, except
! the last one.
NFFILES == 3 ! number of unique forcing files
FRCNAME == ./Inputs/p_001_frc.nc \ ! forcing file 1, grid 1
./Inputs/u_001_frc.nc \
./Inputs/v_001_frc.nc
! Output NetCDF file names, [1:Ngrids].
DAINAME == roms_dai.nc
GSTNAME == roms_gst.nc
RSTNAME == ./Output/p2_frc_y_bry_rst.nc
HISNAME == ./Output/p2_frc_y_bry_his.nc
QCKNAME == roms_qck.nc
TLMNAME == roms_tlm.nc
TLFNAME == roms_tlf.nc
ADJNAME == roms_adj.nc
AVGNAME == roms_avg.nc
HARNAME == roms_har.nc
DIANAME == roms_dia.nc
STANAME == p2_frc_y_bry_sta.nc
FLTNAME == roms_flt.nc
! Input ASCII parameter filenames.
APARNAM = s4dvar.in
SPOSNAM = ./Inputs/stations_Bimep_MallaDetalle_325m.in
FPOSNAM = floats.in
BPARNAM = bio_Fennel.in
SPARNAM = sediment.in
USRNAME = MyFile.dat "
The problem is with the dimensions
This is the error running with romsG
At line 771 of file read_phypar.f90
Fortran runtime error: Index '21858' of dimension 1 of array 'hout' above upper bound of 1400
And with romsS
Process Information:
Thread # 0 (pid= 37290) is active.
INITIAL: Configuring and initializing forward nonlinear model ...
*******
GET_GRID - Illegal input file type, io_type = 0
Check KeyWord 'INP_LIB' in 'roms.in'.
Found Error: 02 Line: 91 Source: ROMS/Utility/get_grid.F
Found Error: 02 Line: 85 Source: ROMS/Utility/set_grid.F
ANA_INITIAL - vertically integrated u-momentum component: ubar
(Grid = 01, Min = 0.00000000E+00 Max = 0.00000000E+00)
ANA_INITIAL - vertically integrated v-momentum component: vbar
(Grid = 01, Min = 0.00000000E+00 Max = 0.00000000E+00)
ANA_INITIAL - free-surface: zeta
(Grid = 01, Min = 0.00000000E+00 Max = 0.00000000E+00)
ANA_INITIAL - u-momentum component: u
(Grid = 01, Min = 0.00000000E+00 Max = 0.00000000E+00)
ANA_INITIAL - v-momentum component: v
(Grid = 01, Min = 0.00000000E+00 Max = 0.00000000E+00)
ANA_INITIAL - potential temperature: temp
(Grid = 01, Min = 1.40000000E+01 Max = 1.40000000E+01)
ANA_INITIAL - :
(Grid = 01, Min = 0.00000000E+00 Max = 0.00000000E+00)
Found Error: 02 Line: 629 Source: ROMS/Utility/check_multifile.F, check_file
CHECK_FILE - unable to open grid NetCDF file: ./Inputs/p_001_frc.nc
Found Error: 02 Line: 432 Source: ROMS/Utility/check_multifile.F, multifile_info_s2d
Found Error: 02 Line: 188 Source: ROMS/Utility/check_multifile.F
Found Error: 02 Line: 656 Source: ROMS/Nonlinear/initial.F
Found Error: 02 Line: 197 Source: ROMS/Drivers/nl_roms.h, ROMS_initialize
Elapsed wall CPU time for each process (seconds):
Thread # 0 CPU: 1.265
Total: 1.265
Nonlinear model elapsed CPU time profile, Grid: 01
Allocation and array initialization .............. 1.193 (94.2916 %)
2D/3D coupling, vertical metrics ................. 0.029 ( 2.2979 %)
Omega vertical velocity .......................... 0.008 ( 0.6513 %)
Equation of state for seawater ................... 0.014 ( 1.1420 %)
Total: 1.245 98.3828 %
Unique kernel(s) regions profiled ................ 1.245 98.3828 %
Residual, non-profiled code ...................... 0.020 1.6172 %
All percentages are with respect to total time = 1.265
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
Dynamic and Automatic memory (MB) usage for Grid 01: 1366x220x10 tiling: 1x1
tile Dynamic Automatic USAGE
0 -21362.87 191.49 -21171.39
TOTAL -21362.87 191.49 -21171.39
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
Found Error: 02 Line: 85 Source: ROMS/Utility/close_io.F, close_file_nf90
Found Error: 02 Line: 85 Source: ROMS/Utility/close_io.F, close_file_nf90
Found Error: 02 Line: 85 Source: ROMS/Utility/close_io.F, close_file_nf90
Found Error: 02 Line: 85 Source: ROMS/Utility/close_io.F, close_file_nf90
Found Error: 02 Line: 85 Source: ROMS/Utility/close_io.F, close_file_nf90
Found Error: 02 Line: 85 Source: ROMS/Utility/close_io.F, close_file_nf90
ROMS/TOMS - Output NetCDF summary for Grid 01:
Analytical header files used:
ROMS/Functionals/ana_initial.h
Found Error: 02 Line: 413 Source: ROMS/Utility/close_io.F, close_out
ROMS/TOMS - Input error ............. exit_flag: 2
ERROR: Abnormal termination: NetCDF INPUT.
REASON: No error
Note: The following floating-point exceptions are signalling: IEEE_INVALID_FLAG IEEE_DIVIDE_BY_ZERO
ERROR STOP.
I know that the code is trying to access an element at position 21983 of an array named 'hout', in its dimension 1. However, the upper bound of dimension 1 of the 'hout' array is set to 1400 elements.
¿How could find some solution for it?
Thanks and excuse me for the questions that can be a bit simple.
